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LOC4343640 uncharacterized LOC4343640 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343640, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343640
Gene description
uncharacterized LOC4343640
Locus tag
OSNPB_070568200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1092_A07.126
Expression
Ubiquitous expression in flowers (RPKM 9.8), flower buds (RPKM 9.5) and 6 other tissues See more
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Genomic context

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See LOC4343640 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23061295..23066677, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22831862..22837308, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO84C Neighboring gene nodulation receptor kinase Neighboring gene zinc finger CCCH domain-containing protein 50-like Neighboring gene HVA22-like protein k

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4343640
Names
Os07g0568200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    23061295..23066677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791461.3 → XP_015646947.1  uncharacterized protein LOC4343640 isoform X2

    UniProtKB/TrEMBL
    Q0D5D2, Q7F1H9
    Conserved Domains (1) summary
    cl21498
    Location:184 → 224
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_015791460.3 → XP_015646946.1  uncharacterized protein LOC4343640 isoform X2

    UniProtKB/TrEMBL
    Q0D5D2, Q7F1H9
    Conserved Domains (1) summary
    cl21498
    Location:184 → 224
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_015791459.3 → XP_015646945.1  uncharacterized protein LOC4343640 isoform X1

    Conserved Domains (1) summary
    cl21498
    Location:195 → 235
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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