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LOC4343653 zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343653, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4343653
Gene description
zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Locus tag
OSNPB_070569700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SAP16; OsSAP16; OJ1019_E02.22
Expression
Broad expression in roots before flowering (RPKM 63.4), leaves after flowering (RPKM 25.3) and 5 other tissues See more
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Genomic context

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See LOC4343653 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23160204..23162709)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22930745..22933215)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343651 Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene chaperonin-like RbcX protein 2, chloroplastic Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene insulin-degrading enzyme-like 1, peroxisomal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Natural variation reveals that OsSAP16 controls low-temperature germination in rice. Wang X, et al. J Exp Bot, 2018 Jan 23. PMID 29237030, Free PMC Article
  2. Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.). Wang F, et al. PLoS One, 2016. PMID 27303811, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Loss of OsSAP16 function reduces germination while greater expression of OsSAP16 enhances germination at low temperature (LTG). In addition, accessions with extremely high and low LTG values have correspondingly high and low OsSAP16 expression at low temperatures, suggesting that variation in expression of the OsSAP16 gene contributes to LTG variation.
    Title: Natural variation reveals that OsSAP16 controls low-temperature germination in rice.
  2. Data show that overexpression of LOC_Os07g38240 (OsSAP16) led to global changes in gene expression consistent with the function of zinc-finger transcription factors.
    Title: Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Names
LOC_Os07g38240
putative arsenite inducible RNA associated protein
zinc finger AN1 and C2H2 domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422219.1 → NP_001409148.1  zinc finger AN1 and C2H2 domain-containing stress-associated protein 16

    Status: VALIDATED

    Source sequence(s)
    AU088671, CF309834, CF309835, D46889, HQ324818
    UniProtKB/Swiss-Prot
    Q0D5B9, Q7XIH5
    UniProtKB/TrEMBL
    A0A8J8XVJ2, B8B7I4, B9FY02, G8CTM0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    23160204..23162709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0D5B9.2 GenPept UniProtKB/Swiss-Prot:Q0D5B9

Gene LinkOut

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Molecular Biology Databases
Research Materials