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LOC4343782 momilactone A synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343782, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4343782
Gene description
momilactone A synthase-like
Locus tag
OSNPB_070592100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1710_H11.104
Expression
Ubiquitous expression in mature seeds (RPKM 7.3), milk grains (RPKM 3.4) and 6 other tissues See more
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Genomic context

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See LOC4343782 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24352849..24354728)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24128286..24129770)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343779 Neighboring gene snakin-1 Neighboring gene aspartic proteinase 36 Neighboring gene FRIGIDA-like protein 3 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
momilactone A synthase-like
Names
Os07g0592100
putative short-chain alcohol dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24352849..24354728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791056.3 → XP_015646542.1  momilactone A synthase-like isoform X1

    UniProtKB/TrEMBL
    A0A0P0X8K6
    Conserved Domains (1) summary
    cl21454
    Location:56 → 310
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  2. XM_015791058.3 → XP_015646544.1  momilactone A synthase-like isoform X2

    UniProtKB/TrEMBL
    A0A0P0X8K6, B7F0S0, B8B815, Q7XIP2
    Conserved Domains (1) summary
    cl21454
    Location:35 → 289
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  3. XM_066312231.1 → XP_066168328.1  momilactone A synthase-like isoform X1

    UniProtKB/TrEMBL
    A0A0P0X8K6
Nucleotide Protein
Heading Accession and Version

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