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LOC4343783 aspartic proteinase 36 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343783, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343783
Gene description
aspartic proteinase 36
Locus tag
OSNPB_070592200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1710_H11.105-1
Expression
Broad expression in leaves after flowering (RPKM 69.8), roots after flowering (RPKM 64.0) and 6 other tissues See more
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Genomic context

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See LOC4343783 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24354289..24361923, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24129693..24137362, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343779 Neighboring gene snakin-1 Neighboring gene momilactone A synthase-like Neighboring gene FRIGIDA-like protein 3 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartic proteinase 36
Names
Os07g0592200
putative CND41, chloroplast nucleoid DNA binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24354289..24361923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791054.3 → XP_015646540.1  aspartic proteinase 36 isoform X1

    UniProtKB/TrEMBL
    A0A0P0X8F8, B9FY74, Q84RX6
    Conserved Domains (1) summary
    cd05476
    Location:90 → 433
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

  2. XM_015791055.3 → XP_015646541.1  aspartic proteinase 36 isoform X2

    Conserved Domains (1) summary
    cd05476
    Location:39 → 313
    pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
Nucleotide Protein
Heading Accession and Version

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