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LOC4343808 pentatricopeptide repeat-containing protein At1g26460, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343808, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343808
Gene description
pentatricopeptide repeat-containing protein At1g26460, mitochondrial
Locus tag
OSNPB_070599000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1634_B10.107
Expression
Ubiquitous expression in flower buds (RPKM 20.0), flowers (RPKM 17.1) and 6 other tissues See more
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Genomic context

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See LOC4343808 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24676437..24680433)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24451594..24455568)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZAT1 Neighboring gene uncharacterized LOC4343807 Neighboring gene putative pentatricopeptide repeat-containing protein At1g26500 Neighboring gene protein PELPK1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At1g26460, mitochondrial
Names
Os07g0599000
pentatricopeptide (PPR) repeat-containing protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    24676437..24680433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789113.3 → XP_015644599.1  pentatricopeptide repeat-containing protein At1g26460, mitochondrial

    UniProtKB/TrEMBL
    A0A0P0X894, A3BLV6, Q7XAM2
    Conserved Domains (4) summary
    PLN03218
    Location:469 → 563
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:461 → 488
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:493 → 538
    PPR_2; PPR repeat family
    pfam17177
    Location:173 → 305
    PPR_long; Pentacotripeptide-repeat region of PRORP
Nucleotide Protein
Heading Accession and Version

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