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LOC4344021 myb-related protein Hv33 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344021, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344021
Gene description
myb-related protein Hv33
Locus tag
OSNPB_070634900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1332_C12.106
Expression
Biased expression in flowers (RPKM 3.9), roots before flowering (RPKM 2.1) and 2 other tissues See more
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Genomic context

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See LOC4344021 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26582479..26584756)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26355858..26358050)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene pectin acetylesterase 12 Neighboring gene uncharacterized LOC107281540 Neighboring gene cytochrome P450 709B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
myb-related protein Hv33
Names
Myb-like DNA-binding protein-like
Os07g0634900
P0455H11.122

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    26582479..26584756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789991.3 → XP_015645477.1  myb-related protein Hv33

    UniProtKB/TrEMBL
    A2YP15, A3BMJ9
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 129
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
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