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LOC4344087 uncharacterized LOC4344087 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344087, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344087
Gene description
uncharacterized LOC4344087
Locus tag
OSNPB_070644200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1003_C06.134; OJ1458_B07.102
Expression
Biased expression in flowers (RPKM 6.8), roots before flowering (RPKM 3.7) and 2 other tissues See more
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Genomic context

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See LOC4344087 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (27043091..27046231)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26815978..26819196)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 Neighboring gene bZIP transcription factor 60-like Neighboring gene uncharacterized LOC4344088 Neighboring gene uncharacterized LOC136357180

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4344087
Names
Os07g0644200
nodulation protein H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    27043091..27046231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790200.3 → XP_015645686.1  uncharacterized protein LOC4344087

    UniProtKB/TrEMBL
    Q0D462, Q7XIP6
    Conserved Domains (1) summary
    cl21551
    Location:89 → 201
    Sulfotransfer_3; Sulfotransferase family

  2. XM_015790201.3 → XP_015645687.1  uncharacterized protein LOC4344087

    UniProtKB/TrEMBL
    Q0D462, Q7XIP6
    Conserved Domains (1) summary
    cl21551
    Location:89 → 201
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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