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LOC4344150 uncharacterized LOC4344150 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344150, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344150
Gene description
uncharacterized LOC4344150
Locus tag
OSNPB_070656700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 60.9), leaves after flowering (RPKM 44.1) and 4 other tissues See more
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Genomic context

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See LOC4344150 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (27857968..27860934)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27630651..27633326)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable glycosyltransferase STELLO1 Neighboring gene magnesium-chelatase subunit ChlH, chloroplastic Neighboring gene uncharacterized LOC4344149 Neighboring gene uncharacterized LOC136357217 Neighboring gene uncharacterized LOC4344151 Neighboring gene serine carboxypeptidase II-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4344150
Names
Os07g0656700
P0047B07.113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    27857968..27860934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791380.2 → XP_015646866.1  uncharacterized protein LOC4344150

    UniProtKB/TrEMBL
    A0A0P0X9N0, A0A8J8XZ11, A2YPH6, A3BN00, Q8H3C6
    Conserved Domains (1) summary
    pfam03350
    Location:103 → 242
    UPF0114; Uncharacterized protein family, UPF0114
Nucleotide Protein
Heading Accession and Version

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