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LOC4344186 nucleolar protein 56-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344186, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344186
Gene description
nucleolar protein 56-like
Gene type
pseudo
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 11.8), leaves after flowering (RPKM 11.6) and 6 other tissues See more
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Genomic context

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See LOC4344186 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28153754..28157653)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27926130..27930485)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase AIRP2 Neighboring gene uncharacterized LOC4344185 Neighboring gene pentatricopeptide repeat-containing protein At1g01970 Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene elongation factor 1-beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28153754..28157653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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