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LOC4344190 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344190, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4344190
Gene description
pentatricopeptide repeat-containing protein At1g08070, chloroplastic
Locus tag
OSNPB_070662700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4344190 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28176531..28178309)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27948810..27950706)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-beta-like Neighboring gene pre-rRNA-processing protein ESF2 Neighboring gene uncharacterized LOC4344191 Neighboring gene uncharacterized LOC136357226 Neighboring gene 4-alpha-glucanotransferase DPE2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At1g08070, chloroplastic
Names
Os07g0662700
P0453E03.118
selenium-binding protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    28176531..28178309
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792453.3 → XP_015647939.1  pentatricopeptide repeat-containing protein At1g08070, chloroplastic

    UniProtKB/TrEMBL
    A2YPM3, A3BN43, Q8H2U1
    Conserved Domains (2) summary
    PLN03077
    Location:31 → 542
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:48 → 73
    PPR; PPR repeat [structural motif]
Nucleotide Protein
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