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LOC4344343 dihydrofolate reductase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344343, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4344343
Gene description
dihydrofolate reductase-like
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1150_E04.119; OJ1200_C08.123
Expression
Broad expression in leaves after flowering (RPKM 147.7), roots after flowering (RPKM 145.4) and 5 other tissues See more
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Genomic context

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See LOC4344343 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29428896..29431286, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29195077..29200384, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene CBL-interacting protein kinase 3 Neighboring gene calmodulin Neighboring gene SNF1-related protein kinase regulatory subunit beta-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
dihydrofolate reductase-like
NP_001409226.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422297.1 → NP_001409226.1  dihydrofolate reductase-like

    Status: VALIDATED

    Source sequence(s)
    CB679831, CI028397, CI565961, D48603
    UniProtKB/TrEMBL
    A0A0P0XAZ8, B9FUZ0, Q8LIG3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29428896..29431286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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