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LOC4344395 PWWP domain-containing protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344395, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344395
Gene description
PWWP domain-containing protein 5
Locus tag
OSNPB_070694500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 12.4), flowers (RPKM 11.3) and 6 other tissues See more
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Genomic context

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See LOC4344395 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29811020..29813314)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29576553..29579245)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene peroxidase 21 Neighboring gene probable glucuronosyltransferase Os07g0694400 Neighboring gene arogenate dehydratase/prephenate dehydratase 2, chloroplastic Neighboring gene L-ascorbate peroxidase 2, cytosolic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PWWP domain-containing protein 5
Names
Os07g0694500
P0627E10.12-1
P0627E10.12-2
PWWP domain protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29811020..29813314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791065.3 → XP_015646551.1  PWWP domain-containing protein 5

    UniProtKB/TrEMBL
    A0A0P0XAU1, A2YQ88, A3BNR1, Q6Z3Y5
    Conserved Domains (1) summary
    pfam00855
    Location:61 → 114
    PWWP; PWWP domain
Nucleotide Protein
Heading Accession and Version

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