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LOC4344401 protein NETWORKED 2D [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344401, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344401
Gene description
protein NETWORKED 2D
Locus tag
OSNPB_070695400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 18.9), flowers (RPKM 10.5) and 6 other tissues See more
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Genomic context

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See LOC4344401 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29868009..29872669, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29633611..29638358, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like PRR37 Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene uncharacterized LOC4344402 Neighboring gene uncharacterized LOC4344403

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NETWORKED 2D
Names
Os07g0695400
P0627E10.23
putative kinase interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    29868009..29872669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791114.3 → XP_015646600.1  protein NETWORKED 2D isoform X2

    UniProtKB/TrEMBL
    B8B6C0, B9FV26, Q0D3B4, Q6Z3X7
    Conserved Domains (2) summary
    COG1196
    Location:151 → 386
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam07765
    Location:11 → 84
    KIP1; KIP1-like protein

  2. XM_015791113.3 → XP_015646599.1  protein NETWORKED 2D isoform X1

    UniProtKB/TrEMBL
    B8B6C0
    Conserved Domains (1) summary
    pfam07765
    Location:11 → 98
    KIP1; KIP1-like protein
Nucleotide Protein
Heading Accession and Version

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