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LOC4344410 ENHANCER OF AG-4 protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344410, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344410
Gene description
ENHANCER OF AG-4 protein 2
Locus tag
OSNPB_080100500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 13.2), leaves before flowering (RPKM 12.1) and 6 other tissues See more
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Genomic context

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See LOC4344410 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (40685..50668)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (36011..46171)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939836 Neighboring gene zinc transporter ZTP29 Neighboring gene probable E3 ubiquitin ligase SUD1 Neighboring gene uncharacterized LOC4344411 Neighboring gene branchpoint-bridging protein Neighboring gene uncharacterized LOC4344413

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ENHANCER OF AG-4 protein 2
Names
B1147B12.7-1
B1147B12.7-2
Os08g0100500
PWWP domain protein-like
putative PWWP domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    40685..50668
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026019946.2 → XP_025875731.1  ENHANCER OF AG-4 protein 2

    UniProtKB/TrEMBL
    B8B9X3, Q0J8P8, Q6Z1Z8
    Conserved Domains (2) summary
    cd05834
    Location:16 → 109
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    cl02544
    Location:829 → 955
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  2. XM_015794181.3 → XP_015649667.1  ENHANCER OF AG-4 protein 2

    UniProtKB/TrEMBL
    B8B9X3, Q0J8P8, Q6Z1Z8
    Conserved Domains (2) summary
    cd05834
    Location:16 → 109
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    cl02544
    Location:829 → 955
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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