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LOC4344412 branchpoint-bridging protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344412, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4344412
Gene description
branchpoint-bridging protein
Locus tag
OSNPB_080100700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 11.1), flower buds (RPKM 10.3) and 6 other tissues See more
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Genomic context

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See LOC4344412 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (58583..62833)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (53990..58340)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin ligase SUD1 Neighboring gene ENHANCER OF AG-4 protein 2 Neighboring gene uncharacterized LOC4344411 Neighboring gene uncharacterized LOC4344413 Neighboring gene B3 domain-containing protein IDEF1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
branchpoint-bridging protein
Names
B1147B12.10
Os08g0100700
putative KH domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    58583..62833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794184.3 → XP_015649670.1  branchpoint-bridging protein isoform X1

    UniProtKB/TrEMBL
    B8B9X6
    Conserved Domains (3) summary
    PHA03247
    Location:356 → 613
    PHA03247; large tegument protein UL36; Provisional
    pfam16275
    Location:68 → 165
    SF1-HH; Splicing factor 1 helix-hairpin domain
    cl00098
    Location:172 → 261
    KH-I; K homology (KH) RNA-binding domain, type I

  2. XM_015794186.3 → XP_015649672.1  branchpoint-bridging protein isoform X2

    UniProtKB/TrEMBL
    B8B9X6
    Conserved Domains (3) summary
    PHA03247
    Location:355 → 612
    PHA03247; large tegument protein UL36; Provisional
    pfam16275
    Location:68 → 164
    SF1-HH; Splicing factor 1 helix-hairpin domain
    cl00098
    Location:171 → 260
    KH-I; K homology (KH) RNA-binding domain, type I

  3. XM_015794185.3 → XP_015649671.1  branchpoint-bridging protein isoform X1

    UniProtKB/TrEMBL
    B8B9X6
    Conserved Domains (3) summary
    PHA03247
    Location:356 → 613
    PHA03247; large tegument protein UL36; Provisional
    pfam16275
    Location:68 → 165
    SF1-HH; Splicing factor 1 helix-hairpin domain
    cl00098
    Location:172 → 261
    KH-I; K homology (KH) RNA-binding domain, type I

  4. XM_066303672.1 → XP_066159769.1  branchpoint-bridging protein isoform X2

Nucleotide Protein
Heading Accession and Version

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