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LOC4344444 F-box protein At5g39450 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344444, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4344444
Gene description
F-box protein At5g39450
Locus tag
OSNPB_080105100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1300_E01.9
Expression
Ubiquitous expression in leaves after flowering (RPKM 11.0), roots after flowering (RPKM 10.2) and 6 other tissues See more
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Genomic context

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See LOC4344444 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (282896..286237, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (278006..281608, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene UDP-galactose transporter 1 Neighboring gene PHD finger protein EHD3-like Neighboring gene indole-2-monooxygenase Neighboring gene indole-2-monooxygenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein At5g39450
Names
F-box domain-containing protein
F-box protein family-like
Os08g0105100

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403313.1 → NP_001390242.1  F-box protein At5g39450

    Status: VALIDATED

    Source sequence(s)
    AK069415, C97049, CI257335, CI626807
    UniProtKB/TrEMBL
    A0A0P0XAU0, A0A411P2N4, B9FYN6, Q6ZJM8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    282896..286237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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