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LOC4344501 NAC domain-containing protein 35-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344501, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4344501
Gene description
NAC domain-containing protein 35-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 6.9), leaves after flowering (RPKM 5.3) and 4 other tissues See more
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Genomic context

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See LOC4344501 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (737896..741059)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (732028..736520)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase CHIP Neighboring gene probable methyltransferase At1g29790 Neighboring gene uncharacterized LOC4344504 Neighboring gene uncharacterized LOC4344505

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 35-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    737896..741059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303508.1 → XP_066159605.1  NAC domain-containing protein 35-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials