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LOC4344646 phospholipase A1-Ibeta2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344646, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344646
Gene description
phospholipase A1-Ibeta2, chloroplastic
Locus tag
OSNPB_080143600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4344646 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2418442..2420180)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2406001..2407798)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene lysine-specific histone demethylase 1 homolog 2-like Neighboring gene beta-glucuronosyltransferase GlcAT14B Neighboring gene lipid droplet phospholipase 1 Neighboring gene uncharacterized LOC9271022

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase A1-Ibeta2, chloroplastic
Names
Os08g0143600
P0025F03.19
putative DEFECTIVE IN ANTHER DEHISCENCE1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    2418442..2420180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793555.3 → XP_015649041.1  phospholipase A1-Ibeta2, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0XCH8, A2YR55, Q0J823, Q6ZDM3
    Conserved Domains (1) summary
    cl21494
    Location:11 → 468
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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