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LOC4344873 putative F-box/LRR-repeat protein 23 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344873, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4344873
Gene description
putative F-box/LRR-repeat protein 23
Locus tag
OSNPB_080196200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 10.3), mature seeds (RPKM 10.1) and 6 other tissues See more
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Genomic context

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See LOC4344873 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5634863..5638529, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5584218..5587837, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein 9 Neighboring gene putative F-box/LRR-repeat protein 23 Neighboring gene nuclear transcription factor Y subunit A-4 Neighboring gene putative F-box protein At5g38390

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative F-box/LRR-repeat protein 23
Names
F-box protein family-like
Os08g0196200
P0035F08.33
P0412D08.11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    5634863..5638529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793157.3 → XP_015648643.1  putative F-box/LRR-repeat protein 23 isoform X2

    UniProtKB/TrEMBL
    A0A0K2JMV4
    Conserved Domains (2) summary
    cd09293
    Location:94 → 132
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:12 → 37
    LRR_AMN1; leucine-rich repeat [structural motif]

  2. XM_066303650.1 → XP_066159747.1  putative F-box/LRR-repeat protein 23 isoform X1

    UniProtKB/TrEMBL
    A0A0K2JMV4, Q6Z069, Q6Z934
Nucleotide Protein
Heading Accession and Version

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