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LOC4344912 probable LRR receptor-like serine/threonine-protein kinase At1g56140 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344912, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4344912
Gene description
probable LRR receptor-like serine/threonine-protein kinase At1g56140
Locus tag
OSNPB_080203100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1014_H11.8; OJ1114_D06.122
Expression
Broad expression in roots before flowering (RPKM 10.0), leaves after flowering (RPKM 5.3) and 5 other tissues See more
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Genomic context

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See LOC4344912 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6031826..6039919)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5980797..5988985)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56130 Neighboring gene uncharacterized LOC136351310 Neighboring gene uncharacterized LOC136351401 Neighboring gene disease resistance protein RGA5-like Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56140 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56140

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable LRR receptor-like serine/threonine-protein kinase At1g56140
Names
OSJNBa0073I05.151
Os08g0203100
Os08g0203201
putative Receptor-like serine/threonine kinase(RFK1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    6031826..6039919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303377.1 → XP_066159474.1  probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1

    UniProtKB/TrEMBL
    Q6ZKW0, Q7F106

  2. XM_015794233.3 → XP_015649719.1  probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X2

    UniProtKB/TrEMBL
    Q6ZKW0, Q7F106
    Conserved Domains (3) summary
    PLN00113
    Location:115 → 965
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd14066
    Location:703 → 965
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:152 → 174
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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