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LOC4344925 copper transport protein ATX1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344925, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4344925
Gene description
copper transport protein ATX1
Locus tag
OSNPB_080205400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1119_C05.6
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Genomic context

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See LOC4344925 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6210105..6212371)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (6159005..6161384)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene equilibrative nucleotide transporter 1 Neighboring gene histone-lysine N-methyltransferase ASHR2 Neighboring gene heavy metal-associated isoprenylated plant protein 32 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper transport protein ATX1
Names
Os08g0205400
P0486F07.35
putative copper chaperone

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    6210105..6212371
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792604.2 → XP_015648090.1  copper transport protein ATX1

    UniProtKB/TrEMBL
    A2YSB2, A3BQM1, Q6ZCF3
    Conserved Domains (1) summary
    cd00371
    Location:6 → 65
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
Nucleotide Protein
Heading Accession and Version

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