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LOC4344961 VIN3-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344961, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4344961
Gene description
VIN3-like protein 2
Locus tag
OSNPB_080220600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4344961 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (7390293..7399604, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (7338828..7348115, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351427 Neighboring gene probable pectinesterase/pectinesterase inhibitor 32 Neighboring gene uncharacterized LOC136351375 Neighboring gene uncharacterized LOC9267621

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in epigenetic regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vernalization response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIN3-like protein 2
Names
Os08g0220600
P0691F12.23
putative coiled-coil protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    7390293..7399604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794648.3 → XP_015650134.1  VIN3-like protein 2 isoform X5

    UniProtKB/TrEMBL
    B8BBY4
    Conserved Domains (1) summary
    pfam07227
    Location:136 → 256
    PHD_Oberon; PHD - plant homeodomain finger protein

  2. XM_015794647.3 → XP_015650133.1  VIN3-like protein 2 isoform X3

    UniProtKB/TrEMBL
    B8BBY4
    Conserved Domains (1) summary
    pfam07227
    Location:136 → 256
    PHD_Oberon; PHD - plant homeodomain finger protein

  3. XM_066303419.1 → XP_066159516.1  VIN3-like protein 2 isoform X2

    UniProtKB/TrEMBL
    B8BBY4

  4. XM_066303418.1 → XP_066159515.1  VIN3-like protein 2 isoform X1

    UniProtKB/TrEMBL
    B8BBY4

  5. XM_066303426.1 → XP_066159523.1  VIN3-like protein 2 isoform X7

    UniProtKB/TrEMBL
    B8BBY4

  6. XM_015794651.3 → XP_015650137.1  VIN3-like protein 2 isoform X6

    UniProtKB/TrEMBL
    B8BBY4, B9FZN0, Q6Z2D6
    Conserved Domains (1) summary
    pfam07227
    Location:129 → 249
    PHD_Oberon; PHD - plant homeodomain finger protein

  7. XM_066303423.1 → XP_066159520.1  VIN3-like protein 2 isoform X4

    UniProtKB/TrEMBL
    B8BBY4

  8. XM_066303425.1 → XP_066159522.1  VIN3-like protein 2 isoform X7

    UniProtKB/TrEMBL
    B8BBY4

  9. XM_026027455.2 → XP_025883240.1  VIN3-like protein 2 isoform X6

    UniProtKB/TrEMBL
    B8BBY4, B9FZN0, Q6Z2D6
    Conserved Domains (1) summary
    pfam07227
    Location:129 → 249
    PHD_Oberon; PHD - plant homeodomain finger protein

  10. XM_066303421.1 → XP_066159518.1  VIN3-like protein 2 isoform X4

    UniProtKB/TrEMBL
    B8BBY4

  11. XM_066303424.1 → XP_066159521.1  VIN3-like protein 2 isoform X7

    UniProtKB/TrEMBL
    B8BBY4

  12. XM_015794649.3 → XP_015650135.1  VIN3-like protein 2 isoform X6

    UniProtKB/TrEMBL
    B8BBY4, B9FZN0, Q6Z2D6
    Conserved Domains (1) summary
    pfam07227
    Location:129 → 249
    PHD_Oberon; PHD - plant homeodomain finger protein

  13. XM_066303420.1 → XP_066159517.1  VIN3-like protein 2 isoform X4

    UniProtKB/TrEMBL
    B8BBY4

  14. XM_066303422.1 → XP_066159519.1  VIN3-like protein 2 isoform X4

    UniProtKB/TrEMBL
    B8BBY4
Nucleotide Protein
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