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LOC4345025 hydrolase pyvD [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345025, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345025
Gene description
hydrolase pyvD
Locus tag
OSNPB_080238500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1217_D10.7
Expression
Broad expression in flowers (RPKM 1.1), leaves after flowering (RPKM 0.7) and 5 other tissues See more
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Genomic context

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See LOC4345025 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (8458777..8462878)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8405989..8409982)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g37320 Neighboring gene endo-1,3;1,4-beta-D-glucanase Neighboring gene endo-1,3;1,4-beta-D-glucanase-like Neighboring gene uncharacterized LOC107276716 Neighboring gene uncharacterized LOC4345028

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endo-1,3;1,4-beta-D-glucanase; hydrolase pyvD
Names
Os08g0238500
putative Endo-1,3;1,4-beta-D-glucanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    8458777..8462878
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303530.1 → XP_066159627.1  endo-1,3;1,4-beta-D-glucanase isoform X1

  2. XM_066303531.1 → XP_066159628.1  hydrolase pyvD isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials