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LOC4345149 DNA replication complex GINS protein PSF3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345149, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345149
Gene description
DNA replication complex GINS protein PSF3
Locus tag
OSNPB_080274700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1014_B05.21
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Genomic context

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See LOC4345149 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (10624589..10635260)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (10565392..10578010)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351475 Neighboring gene uncharacterized LOC112939881 Neighboring gene putative receptor-like protein kinase At1g80870 Neighboring gene transmembrane 9 superfamily member 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitotic DNA replication initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GINS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA replication complex GINS protein PSF3
Names
Os08g0274700
probable DNA replication complex GINS protein PSF3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    10624589..10635260
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795301.3 → XP_015650787.1  DNA replication complex GINS protein PSF3

    UniProtKB/TrEMBL
    A0A0P0XED1, A0A8J8XMN6, A3BRF0, Q0J6S2
    Conserved Domains (2) summary
    cd11713
    Location:63 → 169
    GINS_A_psf3; Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)
    cl41778
    Location:4 → 68
    GINS_B; beta-strand (B) domain of GINS complex proteins: Sld5, Psf1, Psf2, Psf3, Gins51 and Gins23

  2. XM_066303468.1 → XP_066159565.1  DNA replication complex GINS protein PSF3

    UniProtKB/TrEMBL
    A0A0P0XED1, A0A8J8XMN6, A3BRF0
Nucleotide Protein
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