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LOC4345280 glucan endo-1,3-beta-glucosidase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345280, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345280
Gene description
glucan endo-1,3-beta-glucosidase 5
Locus tag
OSNPB_080326500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1136_A10.111
Expression
Ubiquitous expression in milk grains (RPKM 1.3), flower buds (RPKM 0.9) and 6 other tissues See more
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Genomic context

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See LOC4345280 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14417047..14422282)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14349316..14354619)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345278 Neighboring gene 60S ribosomal protein L7a-1-like Neighboring gene uncharacterized LOC4345281 Neighboring gene subtilisin-like protease SBT5.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 5
Names
Os08g0326500
P0703C03.46
putative glycosyl hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14417047..14422282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793450.3 → XP_015648936.1  glucan endo-1,3-beta-glucosidase 5

    UniProtKB/TrEMBL
    A2YTY5, Q6ZB97, Q7F1F4
    Conserved Domains (2) summary
    smart00768
    Location:376 → 457
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:36 → 355
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

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