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LOC4345362 bifunctional nuclease 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345362, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4345362
Gene description
bifunctional nuclease 2-like
Locus tag
OSNPB_080357000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BBD2; OsBBD2; OsJ_27034
Expression
Broad expression in roots after flowering (RPKM 324.6), leaves before flowering (RPKM 306.9) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (16469051..16474004, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (16340352..16345282, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345360 Neighboring gene uncharacterized LOC4345361 Neighboring gene bZIP transcription factor 44 Neighboring gene small polypeptide ROTUNDIFOLIA LIKE 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of VCB complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional nuclease 2
Names
LOC_Os08g26870
P0426E02.15
P0426E02.15-2
putative wound inductive
putative wound responsive protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403539.1 → NP_001390468.1  bifunctional nuclease 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AU166844, CB655507, CI216948, CI586509
    UniProtKB/TrEMBL
    A2YUD2

  2. NM_001403541.1 → NP_001390470.1  bifunctional nuclease 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK070322, AP014964, CB656950, CB659921
    UniProtKB/Swiss-Prot
    A0A0N7KPQ6, A3BSC4, Q0J677, Q6YZM6
    UniProtKB/TrEMBL
    A2YUD2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    16469051..16474004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YZM6.1 GenPept UniProtKB/Swiss-Prot:Q6YZM6

Gene LinkOut

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Molecular Biology Databases
Research Materials