U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4345560 uncharacterized LOC4345560 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345560, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4345560
Gene description
uncharacterized LOC4345560
Locus tag
OSNPB_080412600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 12.0), roots after flowering (RPKM 9.5) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19876294..19881253, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19739637..19744525, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene 5'-adenylylsulfate reductase-like 4 Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene uncharacterized LOC4345561 Neighboring gene uncharacterized LOC4345562

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4345560
Names
EVI5-like protein
Os08g0412600

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    19876294..19881253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792853.3 → XP_015648339.1  uncharacterized protein LOC4345560

    UniProtKB/TrEMBL
    B9G0V6
    Conserved Domains (1) summary
    smart00164
    Location:84 → 298
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. XM_015792852.3 → XP_015648338.1  uncharacterized protein LOC4345560

    UniProtKB/TrEMBL
    B9G0V6
    Conserved Domains (1) summary
    smart00164
    Location:84 → 298
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials