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LOC4345583 probable 2-oxoglutarate-dependent dioxygenase AOP1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345583, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4345583
Gene description
probable 2-oxoglutarate-dependent dioxygenase AOP1
Locus tag
OSNPB_080417100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 12.6), flower buds (RPKM 5.2) and 5 other tissues See more
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Genomic context

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See LOC4345583 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20091696..20093110, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19954753..19956259, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene probable 2-oxoglutarate-dependent dioxygenase AOP1 Neighboring gene uncharacterized LOC112939884 Neighboring gene uncharacterized LOC112936191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 2-oxoglutarate-dependent dioxygenase AOP1
Names
2-oxoglutarate-dependent dioxygenase AOP3
Os08g0417100
P0433E10.29
P0477F03.105
putative 2-oxoglutarate-dependent dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    20091696..20093110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793001.3 → XP_015648487.1  probable 2-oxoglutarate-dependent dioxygenase AOP1

    UniProtKB/TrEMBL
    B7F9Y2, B8BAT1
    Conserved Domains (1) summary
    COG3491
    Location:1 → 251
    PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein
Heading Accession and Version

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