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LOC4345655 pentatricopeptide repeat-containing protein At3g47530 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345655, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4345655
Gene description
pentatricopeptide repeat-containing protein At3g47530
Locus tag
OSNPB_080434000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0413H11.3
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Genomic context

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See LOC4345655 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21180516..21186329)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21042968..21048780)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene extracellular ribonuclease LE Neighboring gene malate dehydrogenase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At3g47530
Names
Os08g0434000
P0431A03.25
pentatricopeptide (PPR) repeat-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    21180516..21186329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066312896.1 → XP_066168993.1  pentatricopeptide repeat-containing protein At3g47530

    UniProtKB/TrEMBL
    A0A0N7KPW8, Q6YWL6

  2. XM_066312897.1 → XP_066168994.1  pentatricopeptide repeat-containing protein At3g47530

    UniProtKB/TrEMBL
    A0A0N7KPW8, Q6YWL6

  3. XM_066312898.1 → XP_066168995.1  pentatricopeptide repeat-containing protein At3g47530

    UniProtKB/TrEMBL
    A0A0N7KPW8, Q6YWL6

  4. XM_026027313.2 → XP_025883098.1  pentatricopeptide repeat-containing protein At3g47530

    UniProtKB/TrEMBL
    A0A0N7KPW8, Q6YWL6
    Conserved Domains (2) summary
    PLN03081
    Location:132 → 601
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    sd00004
    Location:296 → 323
    PPR; PPR repeat [structural motif]
Nucleotide Protein
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