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LOC4345663 chlorophyll a-b binding protein P4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345663, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345663
Gene description
chlorophyll a-b binding protein P4, chloroplastic
Locus tag
OSNPB_080435900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Cab27
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Genomic context

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See LOC4345663 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21309090..21311179, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21171276..21172675, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transcription factor CSA-like Neighboring gene uncharacterized LOC4345662 Neighboring gene polypyrimidine tract-binding protein homolog 1 Neighboring gene probable apyrase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chlorophyll a-b binding protein P4, chloroplastic
Names
Os08g0435900
P0413H11.35
chlorophyll a/b binding protein presusor
chlorophyll a/b-binding protein presursor
putative chlorophyll a/b-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    21309090..21311179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794244.2 → XP_015649730.1  chlorophyll a-b binding protein P4, chloroplastic

    UniProtKB/TrEMBL
    A2YVJ1, A3BTG2, Q6YWJ7
    Conserved Domains (1) summary
    PLN00101
    Location:1 → 243
    PLN00101; Photosystem I light-harvesting complex type 4 protein; Provisional
Nucleotide Protein
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Molecular Biology Databases
Research Materials