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LOC4345683 probable CCR4-associated factor 1 homolog 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345683, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345683
Gene description
probable CCR4-associated factor 1 homolog 7
Locus tag
OSNPB_080440300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0528B09.6
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Genomic context

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See LOC4345683 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21557367..21558352)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21418721..21420017)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene temperature-induced lipocalin-1 Neighboring gene poly(A)-specific ribonuclease PARN-like Neighboring gene stromal cell-derived factor 2-like protein Neighboring gene NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable CCR4-associated factor 1 homolog 7
Names
Os08g0440300
P0524F03.33
putative CCR4-NOT transcription complex, subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    21557367..21558352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795589.3 → XP_015651075.1  probable CCR4-associated factor 1 homolog 7

    UniProtKB/TrEMBL
    A2YVL6, A3BTI8, Q6Z9G7, Q6Z9H7
    Conserved Domains (1) summary
    cl23804
    Location:18 → 276
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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