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LOC4345789 probable potassium transporter 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345789, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4345789
Gene description
probable potassium transporter 4
Locus tag
OSNPB_080466200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HAK4; OsHAK4; OsJ_27614
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Genomic context

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See LOC4345789 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23044240..23047776)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22904762..22908290)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene glutamate decarboxylase 1 Neighboring gene DNA polymerase epsilon subunit B-like Neighboring gene uncharacterized LOC107275660 Neighboring gene protein indeterminate-domain 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable potassium transporter 4
Names
LOC_Os08g36340
P0104B02.21
putative HAK4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422593.1 → NP_001409522.1  probable potassium transporter 4

    Status: VALIDATED

    Source sequence(s)
    AK071698, CI105125
    UniProtKB/Swiss-Prot
    A0A0P0XGH8, Q0J551, Q6YSA9, Q9M7J7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23044240..23047776
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YSA9.1 GenPept UniProtKB/Swiss-Prot:Q6YSA9

Gene LinkOut

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Molecular Biology Databases
Research Materials