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LOC4345792 IAA-alanine resistance protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345792, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345792
Gene description
IAA-alanine resistance protein 1
Locus tag
OSNPB_080467400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 17.5), roots before flowering (RPKM 14.5) and 6 other tissues See more
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Genomic context

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See LOC4345792 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23126616..23134506, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22987094..22994961, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107282013 Neighboring gene putative clathrin assembly protein At1g25240 Neighboring gene protein HVA22 Neighboring gene STOREKEEPER protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
IAA-alanine resistance protein 1
Names
Os08g0467400
P0104B02.41
P0470B03.12
putative IAA-alanine resistance protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23126616..23134506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795205.2 → XP_015650691.1  IAA-alanine resistance protein 1

    UniProtKB/TrEMBL
    B9G1C1, Q6YSC5, Q6ZC45
    Conserved Domains (1) summary
    pfam02535
    Location:128 → 494
    Zip; ZIP Zinc transporter

RNA

  1. XR_001548396.3 RNA Sequence

  2. XR_001548394.3 RNA Sequence

  3. XR_001548395.3 RNA Sequence

  4. XR_001548393.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials