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LOC4345793 protein HVA22 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345793, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345793
Gene description
protein HVA22
Locus tag
OSNPB_080467500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Restricted expression toward mature seeds (RPKM 296.2) See more
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Genomic context

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See LOC4345793 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23136086..23137445)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22996533..22997900)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene putative clathrin assembly protein At1g25240 Neighboring gene IAA-alanine resistance protein 1 Neighboring gene STOREKEEPER protein Neighboring gene nitrate reductase [NADH] 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein HVA22
Names
Os08g0467500
P0104B02.43-1
P0104B02.43-2
P0470B03.14-1
P0470B03.14-2
putative abscisic acid-induced protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    23136086..23137445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793486.3 → XP_015648972.1  protein HVA22

    UniProtKB/TrEMBL
    B8BBJ6, B9G1C2
    Conserved Domains (1) summary
    pfam03134
    Location:13 → 98
    TB2_DP1_HVA22; TB2/DP1, HVA22 family
Nucleotide Protein
Heading Accession and Version

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