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LOC4346135 MADS-box transcription factor 51-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346135, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346135
Gene description
MADS-box transcription factor 51-like
Locus tag
OSNPB_080531900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flower buds (RPKM 4.7), flowers (RPKM 4.3) and 3 other tissues See more
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Genomic context

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See LOC4346135 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26665628..26675734)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26518931..26529089)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 16 Neighboring gene MADS-box transcription factor 7-like Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like Neighboring gene nuclear transport factor 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 51-like
Names
Os08g0531900
P0702E04.12
P0702E04.14
agamous-like MADS-box protein AGL3
transcription factor MADS37
transcription factor MADS37-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    26665628..26675734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793952.3 → XP_015649438.1  MADS-box transcription factor 51-like isoform X2

    UniProtKB/TrEMBL
    A0A0P0XI85
    Conserved Domains (1) summary
    cd00265
    Location:13 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

  2. XM_015793951.3 → XP_015649437.1  MADS-box transcription factor 51-like isoform X1

    Conserved Domains (1) summary
    cd00265
    Location:13 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
Nucleotide Protein
Heading Accession and Version

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