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LOC4346230 protein LEAD-SENSITIVE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346230, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4346230
Gene description
protein LEAD-SENSITIVE 1
Locus tag
OSNPB_080546900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0544G09.6; OJ1323_A06.34
Expression
Biased expression in flower buds (RPKM 1.3), roots before flowering (RPKM 1.2) and 2 other tissues See more
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Genomic context

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See LOC4346230 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27540398..27543214, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27393176..27396244, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene RHOMBOID-like protein 2 Neighboring gene heat stress transcription factor B-2b-like Neighboring gene RNA-binding protein 1 Neighboring gene probable 6-phosphogluconolactonase 3, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein LEAD-SENSITIVE 1
Names
Os08g0546900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    27540398..27543214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793443.3 → XP_015648929.1  protein LEAD-SENSITIVE 1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XJY5, Q0J3X7
    Conserved Domains (1) summary
    pfam04970
    Location:26 → 166
    LRAT; Lecithin retinol acyltransferase

  2. XM_015793444.3 → XP_015648930.1  protein LEAD-SENSITIVE 1 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XJY5
    Conserved Domains (1) summary
    pfam04970
    Location:5 → 139
    LRAT; Lecithin retinol acyltransferase
Nucleotide Protein
Heading Accession and Version

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