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LOC4346276 protein indeterminate-domain 6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346276, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346276
Gene description
protein indeterminate-domain 6, chloroplastic
Locus tag
OSNPB_080554400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1125_C01.21
Expression
Broad expression in leaves before flowering (RPKM 18.0), leaves after flowering (RPKM 13.0) and 4 other tissues See more
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Genomic context

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See LOC4346276 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27880390..27886901, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27733188..27739824, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346274 Neighboring gene uncharacterized LOC4346275 Neighboring gene transmembrane 9 superfamily member 8 Neighboring gene transmembrane 9 superfamily member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein indeterminate-domain 6, chloroplastic
Names
OSJNBb0011H15.47
Os08g0554400
putative zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    27880390..27886901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303353.1 → XP_066159450.1  protein indeterminate-domain 6, chloroplastic isoform X1

  2. XM_066303354.1 → XP_066159451.1  protein indeterminate-domain 6, chloroplastic isoform X1

  3. XM_066303356.1 → XP_066159453.1  protein indeterminate-domain 6, chloroplastic isoform X1

  4. XM_066303355.1 → XP_066159452.1  protein indeterminate-domain 6, chloroplastic isoform X1

  5. XM_015794547.3 → XP_015650033.1  protein indeterminate-domain 6, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A0P0XIH2, A2YXZ3, Q6Z3F1
    Conserved Domains (1) summary
    sd00017
    Location:72 → 92
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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