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LOC4346388 sodium/proton antiporter 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346388, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346388
Gene description
sodium/proton antiporter 1
Locus tag
OSNPB_090109800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4346388 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (4897835..4909260)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (878128..889628)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346387 Neighboring gene uncharacterized LOC136351840 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At4g37250 Neighboring gene uncharacterized LOC112936461

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa). Song Liu X, et al. Plant Sci, 2020 Feb. PMID 31928685
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/proton antiporter 1
Names
Na(+)/H(+) antiporter NhaD
Os09g0109800
P0501E09.36-1
P0501E09.36-2
putative Na+/H+ antiporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    4897835..4909260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756906.3 → XP_015612392.1  sodium/proton antiporter 1

    UniProtKB/TrEMBL
    A0A0P0XJN2
    Conserved Domains (1) summary
    PLN00137
    Location:129 → 552
    PLN00137; NHAD transporter family protein; Provisional
Nucleotide Protein
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