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LOC4346411 PI-PLC X domain-containing protein At5g67130 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346411, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4346411
Gene description
PI-PLC X domain-containing protein At5g67130
Locus tag
OSNPB_090115600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0563F09.1; OJ1310_F05.17
Expression
Ubiquitous expression in flower buds (RPKM 10.2), roots after flowering (RPKM 10.1) and 6 other tissues See more
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Genomic context

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See LOC4346411 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1226600..1238519, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein 2 Neighboring gene CBS domain-containing protein CBSX1, chloroplastic Neighboring gene uncharacterized LOC112936392 Neighboring gene uncharacterized LOC4346412

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PI-PLC X domain-containing protein At5g67130
Names
MAP3K protein kinase-like protein
Os09g0115600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1226600..1238519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026020243.1 → XP_025876028.1  PI-PLC X domain-containing protein At5g67130

    UniProtKB/TrEMBL
    B9G254, Q6YW97
    Conserved Domains (1) summary
    cd08588
    Location:60 → 333
    PI-PLCc_At5g67130_like; Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs
Nucleotide Protein
Heading Accession and Version

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