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LOC4346462 WPP domain-associated protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346462, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4346462
Gene description
WPP domain-associated protein
Locus tag
OSNPB_090133800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 21.5), leaves after flowering (RPKM 18.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (6583249..6586823, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (2561815..2565555, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 2, chloroplastic Neighboring gene uncharacterized LOC4346461 Neighboring gene PRA1 family protein H Neighboring gene histone-lysine N-methyltransferase TRX1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
WPP domain-associated protein
Names
Os09g0133800
P0406E03.34-1
myosin heavy chain-like protein
putative myosin heavy chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    6583249..6586823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757119.2 → XP_015612605.1  WPP domain-associated protein

    UniProtKB/TrEMBL
    A2YYQ1, A3BWA3, Q6K437
    Conserved Domains (1) summary
    COG1196
    Location:391 → 617
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_015757117.3 → XP_015612603.1  WPP domain-associated protein

    UniProtKB/TrEMBL
    A2YYQ1, A3BWA3, Q6K437
    Conserved Domains (1) summary
    COG1196
    Location:391 → 617
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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