LOC4346464 histone-lysine N-methyltransferase TRX1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4346464
Gene description: histone-lysine N-methyltransferase TRX1-like
Locus tag: OSNPB_090134500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SET; TRX1; OsTrx1; SDG723; OsSET33
Expression: Ubiquitous expression in roots after flowering (RPKM 13.9), leaves before flowering (RPKM 13.9) and 6 other tissues See more
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Genomic context

Location:: chromosome: 9

Exon count:: 26

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	9	NC_089043.1 (6623051..6637332, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	9	NC_029264.1 (2601643..2615958, complement)

Chromosome 9 - NC_089043.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

SIP1 interacts with Trx1, allowing Trx1 to specifically target Ehd1, altering H3K4me3 levels, increasing Ehd1 expression and thereby promoting flowering.
Title: SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of chromatin	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: histone-lysine N-methyltransferase TRX1

Names: Histone-lysine N-methyltransferase TRX1; LOC_Os09g04890; Os09g0134500; P0406E03.49-1; P0406E03.49-2; Protein SET DOMAIN GROUP 723; SET family protein 33; histone-lysine N-methyltransferase ATX2; trithorax 1 (ATX-1) (TRX1)-like; trithorax-like

NP_001409632.1

EC 2.1.1.364

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422703.1 → NP_001409632.1 histone-lysine N-methyltransferase TRX1

Status: VALIDATED

Source sequence(s)

AK074022, CI664220

UniProtKB/Swiss-Prot

Q6K430, Q6K431

UniProtKB/TrEMBL

B9G282