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LOC4346520 acetyl-CoA acetyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346520, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4346520
Gene description
acetyl-CoA acetyltransferase 2
Locus tag
OSNPB_090252100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 43.1), roots before flowering (RPKM 32.9) and 6 other tissues See more
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Genomic context

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See LOC4346520 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8316782..8322261)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3970057..3975735)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351874 Neighboring gene exosome complex component RRP41 homolog Neighboring gene E3 ubiquitin-protein ligase UPL1 Neighboring gene protein NOI4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetyl-CoA C-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-CoA acetyltransferase 2
Names
Os09g0252100
P0574F11.13
acetyl-CoA acetyltransferase, cytosolic 1
putative acetyl-CoA C-acyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    8316782..8322261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304301.1 → XP_066160398.1  acetyl-CoA acetyltransferase 2

    UniProtKB/TrEMBL
    A0A0N7KQF3, A0A0P0XIX6, A0A8J8XIK0, A2YYZ3, A3BWI0, Q6K3Z3

  2. XM_015795681.3 → XP_015651167.1  acetyl-CoA acetyltransferase 2

    UniProtKB/TrEMBL
    A0A0N7KQF3, A0A0P0XIX6, A0A8J8XIK0, A2YYZ3, A3BWI0, Q6K3Z3
    Conserved Domains (1) summary
    PLN02644
    Location:9 → 400
    PLN02644; acetyl-CoA C-acetyltransferase
Nucleotide Protein
Heading Accession and Version

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