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LOC4346808 exocyst complex component EXO70A1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346808, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346808
Gene description
exocyst complex component EXO70A1
Locus tag
OSNPB_090347300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4346808 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (15236436..15238949)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10897755..10900336)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein SAWADEE HOMEODOMAIN HOMOLOG 1 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC4346809 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exocyst IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exocyst complex component EXO70A1
Names
Os09g0347300
P0512H04.16
leucine zipper protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    15236436..15238949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755849.3 → XP_015611335.1  exocyst complex component EXO70A1

    UniProtKB/TrEMBL
    A0A0P0XLP7, A2Z063, Q6ES92
    Conserved Domains (1) summary
    pfam03081
    Location:192 → 569
    Exo70; Exo70 exocyst complex subunit
Nucleotide Protein
Heading Accession and Version

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