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LOC4346908 xyloglucan O-acetyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346908, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346908
Gene description
xyloglucan O-acetyltransferase 2
Locus tag
OSNPB_090375300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0711A01.5
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Genomic context

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See LOC4346908 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16912802..16914406)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12555240..12557534)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene enolase 1, chloroplastic Neighboring gene heat shock factor-binding protein Neighboring gene uncharacterized LOC4346909 Neighboring gene probable serine/threonine-protein kinase PBL28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan O-acetyltransferase 2
Names
Os09g0375300
leaf senescence protein-like
protein ALTERED XYLOGLUCAN 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    16912802..16914406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755860.3 → XP_015611346.1  xyloglucan O-acetyltransferase 2

    UniProtKB/TrEMBL
    A0A0P0XKX0, A3BY95, Q0J265
    Conserved Domains (2) summary
    pfam13839
    Location:123 → 436
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:66 → 117
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
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