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LOC4346997 transcription factor MYB20 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346997, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346997
Gene description
transcription factor MYB20
Locus tag
OSNPB_090401000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
myb
Expression
Restricted expression toward roots before flowering (RPKM 130.9) See more
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Genomic context

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See LOC4346997 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18398791..18400412)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14029412..14031036)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346996 Neighboring gene uncharacterized LOC112936334 Neighboring gene ABC transporter G family member STR Neighboring gene TPR repeat-containing thioredoxin TDX-like Neighboring gene protein TIFY 6b-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The electronic Plant Gene Register. . Plant Physiol, 1997 May. PMID 9159957, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcription factor MYB20
Names
MYB family transcription factor
Os09g0401000
P0435D08.47
P0650H04.29
myb factor
putative Myb51 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    18398791..18400412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755455.3 → XP_015610941.1  transcription factor MYB20

    UniProtKB/TrEMBL
    A2Z126, O04110, Q0J1Y8, Q6ERV4, Q6ES55
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 129
    PLN03091; hypothetical protein; Provisional
Nucleotide Protein
Heading Accession and Version

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