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LOC4347002 protein XRI1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347002, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347002
Gene description
protein XRI1
Locus tag
OSNPB_090401900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 8.3), flower buds (RPKM 6.8) and 6 other tissues See more
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Genomic context

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See LOC4347002 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14095760..14099858)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene protein TIFY 6b-like Neighboring gene plant UBX domain-containing protein 2 Neighboring gene HMG-Y-related protein A Neighboring gene putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in female meiotic nuclear division IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in male meiotic nuclear division IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein XRI1
Names
OSJNBb0014M19.5
Os09g0401900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    14095760..14099858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755381.2 → XP_015610867.1  protein XRI1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XLY6, B8AT06, Q0J1X8, Q69MW8

  2. XM_015755382.2 → XP_015610868.1  protein XRI1 isoform X2

    UniProtKB/TrEMBL
    B8AT06
Nucleotide Protein
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