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LOC4347015 uncharacterized LOC4347015 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347015, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347015
Gene description
uncharacterized LOC4347015
Locus tag
OSNPB_090407300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0465E03.2; OJ1261_A08.50
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Genomic context

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See LOC4347015 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18745708..18751250, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14368030..14373728, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936409 Neighboring gene probable ubiquitin receptor RAD23 Neighboring gene DNA mismatch repair protein MSH6 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4347015
Names
Os09g0407300
sprT-like domain-containing protein Spartan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    18745708..18751250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756301.3 → XP_015611787.1  uncharacterized protein LOC4347015 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XLK3, A2Z144, Q0J1W6, Q69MX9
    Conserved Domains (1) summary
    pfam10263
    Location:18 → 136
    SprT-like; SprT-like family

  2. XM_015756300.3 → XP_015611786.1  uncharacterized protein LOC4347015 isoform X1

    UniProtKB/TrEMBL
    A2Z144
    Conserved Domains (1) summary
    pfam10263
    Location:18 → 189
    SprT-like; SprT-like family
Nucleotide Protein
Heading Accession and Version

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