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LOC4347073 uncharacterized LOC4347073 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347073, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347073
Gene description
uncharacterized LOC4347073
Gene type
ncRNA
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 6.3), roots after flowering (RPKM 5.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19444627..19450080)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15064688..15072063)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative CBL-interacting protein kinase 27 Neighboring gene uncharacterized LOC112936459 Neighboring gene uncharacterized LOC112936449 Neighboring gene cinnamoyl-CoA reductase 1 Neighboring gene protein ALP1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    19444627..19450080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001540094.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials