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LOC4347211 probable potassium transporter 17 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347211, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4347211
Gene description
probable potassium transporter 17
Locus tag
OSNPB_090448200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HAK17; OsHAK17; OsJ_29574; OJ1596_C06.35-1; OJ1596_C06.35-2
Expression
Biased expression in leaves after flowering (RPKM 136.8), roots after flowering (RPKM 77.0) and 3 other tissues See more
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Genomic context

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See LOC4347211 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21134789..21140071)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16754454..16759661)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347209 Neighboring gene F-box only protein 8 Neighboring gene uncharacterized LOC9266552 Neighboring gene uncharacterized LOC9269015

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Potassium transporter OsHAK17 may contribute to saline-alkaline tolerant mechanisms in rice (Oryza sativa).
    Title: Potassium transporter OsHAK17 may contribute to saline-alkaline tolerant mechanisms in rice (Oryza sativa).
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable potassium transporter 17
Names
LOC_Os09g27580
P0047B10.17-1
P0047B10.17-2
putative HAK4
putative potasium transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422773.1 → NP_001409702.1  probable potassium transporter 17 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK066194, AK068574, CI146212, CI679135
    UniProtKB/TrEMBL
    B8BCL5

  2. NM_001422774.1 → NP_001409703.1  probable potassium transporter 17 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK068574, CI146212, CI693512
    UniProtKB/Swiss-Prot
    Q0J1D4, Q67UC7, Q67UC8, Q8VXB6
    UniProtKB/TrEMBL
    B8BCL5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    21134789..21140071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67UC7.2 GenPept UniProtKB/Swiss-Prot:Q67UC7

Gene LinkOut

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Molecular Biology Databases
Research Materials