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LOC4347521 transmembrane emp24 domain-containing protein p24beta2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347521, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4347521
Gene description
transmembrane emp24 domain-containing protein p24beta2
Locus tag
OSNPB_090507600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4347521 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24089504..24092327, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19677776..19681435, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene peroxidase 73 Neighboring gene uncharacterized LOC136351761 Neighboring gene 60S ribosomal protein L7a-1-like Neighboring gene protein SMALL AUXIN UP-REGULATED RNA 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane emp24 domain-containing protein p24beta2
Names
Os09g0507600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    24089504..24092327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756491.3 → XP_015611977.1  transmembrane emp24 domain-containing protein p24beta2

    UniProtKB/TrEMBL
    A0A0P0XQB3, A0A8J8XK44, A2Z2X8, A3C0G9
    Conserved Domains (1) summary
    pfam01105
    Location:24 → 203
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD
Nucleotide Protein
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